EGAF00005756439 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005756439
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1259485
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGCAGCGCTGGGTGCTTTATTTCCATGCTGGGCGCCCGGGAAGTATGTA	2047	0.16252674704343442	No Hit
GTATGTACAGGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC	1928	0.1530784407912758	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1745	0.1385486925211495	No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT	1663	0.13203809493562846	No Hit
GTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGG	1565	0.12425713684561547	No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT	1389	0.11028317129620441	No Hit
GTACAGGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCCGGGGAGCGGGGGCTTGCCGGCCGTCGCA	1363	0.10821883547640504	No Hit
CTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAG	1343	0.10663088484579014	No Hit
CATTTACCCGGAGACAGGGAGAGGCTCTTCTGCGTGTAGTGGTTGTGCAG	1263	0.10027908232333056	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	2250	0.0	42.48518	1
GTGGTAT	715	0.0	41.21053	1
GTATCAA	5455	0.0	40.386105	1
CGTATGC	265	0.0	36.57784	41
TGGTATC	810	0.0	36.377193	2
TCGTATG	250	0.0	35.961197	40
CATATCG	40	0.0026099612	34.46343	36
TATCAAC	6415	0.0	34.23554	2
ATCAACG	6650	0.0	33.231796	3
ACGAGAC	300	0.0	33.126743	22
TCAACGC	6715	0.0	32.91012	4
CTCGTAT	225	0.0	32.23153	39
CAACGCA	6905	0.0	32.054173	5
AACGCAG	7070	0.0	31.403017	6
CGAGACG	320	0.0	31.061258	23
TATGCCG	315	0.0	30.846092	43
GCCGTCT	305	0.0	29.673811	46
CGCAGAG	7480	0.0	29.53493	8
TGCCGTC	320	0.0	29.338692	45
ATGCCGT	335	0.0	29.036068	44