EGAF00005756440 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005756440
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1259485
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2868	0.22771212043017583	No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT	2037	0.16173277172812697	No Hit
GTATGTACAGGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC	1964	0.1559367519263826	No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT	1887	0.14982314199851526	No Hit
GGGCAGCGCTGGGTGCTTTATTTCCATGCTGGGCGCCCGGGAAGTATGTA	1559	0.123780751656431	No Hit
CATTTACCCGGAGACAGGGAGAGGCTCTTCTGCGTGTAGTGGTTGTGCAG	1425	0.11314148243131122	No Hit
GTACAGGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCCGGGGAGCGGGGGCTTGCCGGCCGTCGCA	1309	0.10393136877374481	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	885	0.0	44.877388	1
GTATCAA	6045	0.0	42.53598	1
TGGTATC	960	0.0	41.70973	2
GGTATCA	2360	0.0	40.476696	1
TATCAAC	7100	0.0	36.055042	2
CGAACGA	40	0.0022710792	35.454548	61
ATCAACG	7420	0.0	34.52426	3
ATATCGC	40	0.0027268797	34.156796	6
TCAACGC	7510	0.0	34.07936	4
CAACGCA	7670	0.0	33.446922	5
AACGCAG	7750	0.0	33.187183	6
TTCGTAT	80	0.0036531887	32.1756	70
CGCAGAG	8320	0.0	30.99565	8
CAGAGTA	8725	0.0	29.79177	10
GCAGAGT	8775	0.0	29.544167	9
AGAGTAC	8960	0.0	29.010405	11
ACGCAGA	9070	0.0	28.394953	7
GCCGTTA	230	0.0	28.22769	15
TGTCGGA	330	0.0	27.98347	62
CGGATCC	310	0.0	27.725168	65