EGAF00005756473 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005756473
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1837068
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	3262	0.17756555554829762	No Hit
CCCTTGGACAGGCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTA	3177	0.17293861740556146	No Hit
GTGTGTACCTTGCATGCAGTAATAAACCCCAGCATCCTCAGCCTCCACCC	2347	0.12775792730590266	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2343	0.12754018904036216	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	2322	0.12639706314627439	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	2130	0.11594562640032922	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	2009	0.10935904386772835	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	1977	0.10761713774340416	No Hit
GTACACACTGGCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAA	1974	0.10745383404424877	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	1940	0.10560305878715433	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	2930	43.17862	1
GTATCAA	7425	40.74504	1
TGGTATC	1025	39.24088	2
GTGGTAT	1080	38.198475	1
TATCAAC	8275	36.51721	2
ATCAACG	8855	34.20299	3
TCAACGC	8895	33.93324	4
CAACGCA	9115	33.114223	5
AACGCAG	9275	32.580044	6
AGACGTA	280	31.939535	25
ACGTAGA	285	30.183813	27
CGCAGAG	10030	30.116129	8
GACGTAG	300	29.814295	26
ACGCAGA	10175	29.687763	7
AGAGTAC	10115	29.65921	11
CAGAGTA	10345	28.933361	10
GCAGAGT	10500	28.735346	9
ACGAGAC	320	26.858303	22
CGAGACG	335	25.660583	23
CGTAGAG	350	25.56695	28