FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005756499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005756499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1130329
Sequences flagged as poor quality0
Sequence length20-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTTACACTGGTACCAGCACAAACCAGGTCAGTCTCCAAAGCTCTTCAT20360.18012454780864687No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT19780.1749932984113475No Hit
GTATTACTGTCATCAGACTACTAGTTTACCTCAGACGTTCGGCCAAGGGA18390.16269599382126798No Hit
CAGTAATACATTGCGGCATCTTCAGCCTCCGGGCTATCGATGGTGAGGGTGAAATCTGTCCCAGATCCACTGCCA13730.12146905900848337No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13520.11961119284739222No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG12690.11226819802022242No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC12360.10934869405279347No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC12020.10634072026816971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)