FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005756733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005756733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences711758
Sequences flagged as poor quality0
Sequence length20-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT12690.17829093596419007No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT12020.1688776241362935No Hit
GTAGTATACGGCCGTGTCCTCGGCTCTCAGGCTGTTCATTTCCAGAAACA11050.15524939656456266No Hit
GTATACTACTGTGCGAAATCCGGGAGTCGAAACATGTATAAGTACGATAGTAGGCGTCCATTTGACGACTGGGGC10370.14569558754520495No Hit
GTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGG9670.135860784142925No Hit
GTATGTAGACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC9400.13206735997347413No Hit
CTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGT8950.12574498635772272No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAGCAGCTTGGGCACCCAGAC8690.122092059379733No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC8410.118158138018821No Hit
CATTTACCCGGGGACAGGGAGAGGCTCTTCTGCGTGTAGTGGTTGTGCAG7480.10509189921293473No Hit
GGACTGAACAGAGAGAACTCACCATGGAGTTTGGGCTGAGCTGGCTTTTT7430.10438941325562902No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT7360.10340593291540102No Hit
GTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAACTGGTACGT7260.10200096100078959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)