FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005756873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005756873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences963589
Sequences flagged as poor quality0
Sequence length20-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATGTACACGGGGTACGTGCCAAGCATCCTCGCGCGACCCCGAGAGCCT16940.17580109361979018No Hit
GTAATACACGGCCGTGTCCTCGACTCTCAGGCTGTTCATTTGCAGATACA14680.15234711064572137No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT13800.14321458630183614No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGTTTTGGAGATGGTTTT13250.1375067585869079No Hit
GTGTATTACTGTGCGAGAGATGGTCCCCGAGACTGGGAGTTACTGACCTA12920.13408206195795097No Hit
CCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCGAAGCCTCGTA11400.11830770172760378No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGAGCGCCTGAGT11320.11747747224179603No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT11120.11540189852727667No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC11020.11436411167001699No Hit
GTGGTGGACGTGAGCCACGAAGACCCCGAGGTCCAGTTCAACTGGTACGT9820.1019106693829008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)