EGAF00005756874 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005756874
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	963589
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1756	0.1822353721348002	No Hit
GTAATACACGGCCGTGTCCTCGACTCTCAGGCTGTTCATTTGCAGATACA	1515	0.15722470887484186	No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGTTTTGGAGATGGTTTT	1480	0.153592454874433	No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGCGCGACCCCGAGAGCCT	1433	0.14871485664531248	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1368	0.14196924207312453	No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT	1186	0.12308152127099832	No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGAGCGCCTGAGT	1127	0.11695857881316621	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCTAG	15	0.0022954738	69.450066	43
GGTATCA	755	0.0	42.334194	1
GTATCAA	2170	0.0	42.128616	1
TATCAAC	2350	0.0	38.30085	2
TCAACGC	2500	0.0	35.865383	4
ATCAACG	2505	0.0	35.793797	3
CAACGCA	2590	0.0	34.619095	5
CGCGTAT	40	0.0026426648	34.37522	12
AACGCAG	2690	0.0	33.594532	6
ACGCAGA	2840	0.0	31.589674	7
AGAGTAC	2885	0.0	31.098553	11
CGCAGAG	2935	0.0	30.685886	8
GTGGTAT	260	0.0	30.402533	1
CAGAGTA	2980	0.0	30.222511	10
CGAACTA	70	3.9105274E-5	29.504309	29
GCAGAGT	3100	0.0	29.163494	9
GTACACG	585	0.0	28.187744	5
TATGTAC	590	0.0	27.948866	2
CGGTTTA	50	0.007594948	27.703009	40
AGTACGG	2310	0.0	27.381128	13