FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005756913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005756913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1016748
Sequences flagged as poor quality0
Sequence length20-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGT16570.1629705689118641No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC14950.14703741733448208No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT11220.11035182759149759No Hit
GTGTGGGGGCTGCTCCCGGGAGTTGTTGGTACCAGGATACATAATTATTG10820.10641771609090946No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT10280.10110666556511544No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG10170.1000247849024537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)