EGAF00005756965 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005756965
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	859262
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC	1277	0.14861590527685387	No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGG	1071	0.12464184381480853	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT	1023	0.11905565473627369	No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCGC	1011	0.11765910746663999	No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT	1002	0.11661169701441469	No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCGCAGCACTCAGG	931	0.1083487923357486	No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC	898	0.10450828734425588	No Hit
GCCCCCACACTCCTCATTTTTGACAATACTAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGT	860	0.10008588765708247	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	790	41.459816	1
GTATCAA	1825	41.183613	1
TCTCGTA	200	39.78075	38
TCGTATG	225	38.473732	40
TATCAAC	1975	37.66931	2
CTCGTAT	240	34.60409	39
ATCAACG	2165	34.52255	3
TCAACGC	2175	34.522182	4
CAACGCA	2200	34.129887	5
CGTATGC	255	33.95933	41
ACGAGAC	275	33.820705	22
AACGCAG	2280	33.083412	6
AATCTCG	245	32.434277	36
TATACAC	330	32.35555	3
ATGCCGT	270	32.125343	44
AGAGTAC	2450	30.791412	11
ACGCAGA	2465	30.740206	7
CGCAGAG	2465	30.740206	8
AGGGGGG	265	30.436846	70
TATGCCG	285	30.425617	43