EGAF00005757150 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757150
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1533885
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2890	0.18841047405770314	No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC	2259	0.14727310065617696	No Hit
TCTCAAGACTCCGGGCTGAGGACGAGGCTGATTATTCCTGCAGTTCATAT	2078	0.13547299830169798	No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAGGCCACTGTCACGGCTC	1992	0.12986631983492894	No Hit
GCCTTGGGCTGACCTAGGACGGTCAACTTGGTCCCTCCGCCAAAAGCCACGAGCGTGCGCGTGCTTGTATATGAA	1949	0.12706298060154445	No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGG	1864	0.12152149607043553	No Hit
GACCTAGGACGGTCAACTTGGTCCCTCCGCCAAAAGCCACGAGCGTGCGC	1792	0.11682753270290797	No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT	1692	0.11030813913689749	No Hit
GTCCTGGGCCCAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTG	1552	0.1011809881444828	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1355	42.122147	1
GTATCAA	3330	40.47469	1
CTAACGA	275	39.288914	69
TATCAAC	3715	36.18051	2
TCTAACG	265	35.09469	68
TCAACGC	3830	35.09415	4
ATCAACG	3850	34.822556	3
CAACGCA	3910	34.376114	5
AACGCAG	4005	34.081253	6
ACGCAGA	4245	32.17223	7
CGCAGAG	4485	30.610031	8
AGAGTAC	4500	30.12766	11
CAGAGTA	4625	29.685396	10
GTCTAAC	330	28.262545	67
GCAGAGT	4890	28.07668	9
TACGGGT	460	26.924107	15
GTGGTAT	410	26.835384	1
GACGTGT	355	26.77181	62
GAGTACG	4075	25.163458	12
TTGGACG	350	25.075043	59