EGAF00005757254 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757254
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1345622
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3059	0.22732981476224376	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	2305	0.17129624812911798	No Hit
GTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA	2140	0.15903426073592733	No Hit
GTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAG	1593	0.11838391465062255	No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT	1516	0.11266165386713356	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	1514	0.11251302371691307	No Hit
GTCTGGGACAGACTTCACTCTCGCCATCAGCAGCCTAGAGCCTGACGATT	1495	0.11110103728981839	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	1392	0.10344658455346299	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1370	0.10181165290103758	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGCG	30	6.7470514E-4	45.381687	7
GTATCAA	4135	0.0	40.97797	1
GGTATCA	1675	0.0	40.42359	1
TATCAAC	4740	0.0	35.59748	2
TCAACGC	4880	0.0	34.50653	4
ATCAACG	4920	0.0	34.502567	3
CAACGCA	4970	0.0	33.881668	5
AACGCAG	5075	0.0	33.251404	6
CGCAGAG	5400	0.0	31.266428	8
AGAGTAC	5450	0.0	30.980732	11
ACGCAGA	5605	0.0	30.180239	7
GCAGAGT	5660	0.0	29.891415	9
CAGAGTA	5965	0.0	28.363018	10
AGTACGG	4475	0.0	28.298042	13
GAGTACG	4515	0.0	27.971947	12
TACGGGC	610	0.0	27.34569	15
GTACGGG	4825	0.0	26.10326	14
TACGGGG	2095	0.0	25.836622	15
GTGGTAT	1005	0.0	24.376034	1
ACGGGAT	285	0.0	23.891317	16