EGAF00005757373 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757373
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	42470
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATCTCGTATGCCGT	1141	2.6866023075111842	No Hit
ATACACATCTCCGAGCCCACGAGACTAGCGCTCATCTCGTATGCCGTCTT	220	0.5180127148575465	TruSeq Adapter, Index 7 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATGTCGTATGCCGT	156	0.36731810689898753	No Hit
ACACATCTCCGAGCCCACGAGACTAGCGCTCATCTCGTATGCCGTCTTCT	114	0.2684247704261832	RNA PCR Primer, Index 7 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACTAGCGCTCAGCTCGTATGCCGT	110	0.25900635742877326	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	95	0.223687308688486	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	87	0.20485048269366612	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATCGCGTATGCCGT	83	0.19543206969625618	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	66	0.15540381445726395	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATATCGTATGCCGT	65	0.15304921120791148	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	64	0.15069460795855896	No Hit
CTGAAAGACAGGCTATTTTATTTCAAAAAAAGAAAAAAAAGTGGGCTCTGGGAACAGGGACTAGCCCGTACTCTG	51	0.12008476571697668	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGCGCTCATCTCGTATGCC	50	0.11773016246762422	No Hit
GTATCAACGCAGAGTACGGGTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGG	49	0.11537555921827172	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49	0.11537555921827172	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48	0.11302095596891924	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48	0.11302095596891924	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTGGGG	25	9.911702E-6	105.93069	70
ATGCTTG	15	0.0013964124	78.5536	54
TTATGCT	15	0.001488321	77.30491	52
AGGGGGG	255	0.0	72.69753	70
CGTATGG	20	7.6688906E-5	70.29566	41
ATCGTAT	15	0.0023229546	69.11499	39
TATCGTA	15	0.0024818678	67.97331	38
GAGTGTG	15	0.0031846792	63.836514	28
GGAGTGT	15	0.0032454503	63.533257	27
GGGGATC	15	0.0033382222	63.08373	18
TGTCGTA	65	0.0	62.744602	38
ATGTCGT	65	0.0	62.42731	37
TATGCTT	20	0.004602593	58.14674	53
CATGTCG	70	0.0	57.676548	36
TATGGCG	25	2.0406414E-4	57.676548	43
TCATGTC	70	0.0	57.10194	35
CTCATGT	70	0.0	56.96007	34
CCGGCTT	20	0.0055700187	55.416092	47
GACGGCT	20	0.005662095	55.187412	46
TCTTCTG	295	0.0	51.9596	50