EGAF00005757378 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757378
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	486080
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	11234	2.31114219881501	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	1177	0.24214121132323896	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	740	0.15223831468071097	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	568	0.11685319289005926	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	554	0.11397300855826202	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	523	0.10759545753785385	No Hit
GTATCAACGCAGAGTACGGGTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGG	522	0.10738973008558263	No Hit
GTATCAACGCAGAGTACGGGGATCTAAAAAAAAAAAAAAAAAAAAAAAAA	496	0.10204081632653061	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	970	0.0	52.643974	1
GTAATGC	20	0.008656352	49.662983	26
TATTGCG	20	0.008816842	49.432682	17
AGCTTAG	20	0.008831214	49.412315	16
TAGCAGA	20	0.008863616	49.366547	8
TATACTT	20	0.008874435	49.35131	5
TCGTAAC	30	7.932901E-4	43.908485	2
GTATTAA	35	8.6622755E-4	43.129776	63
TTAGATC	95	0.0	41.57183	3
ACCTATG	35	0.0015547879	38.294395	31
GTATCAA	6790	0.0	37.117638	1
AGGTACC	40	0.0021666386	35.79144	47
TGGTATC	1445	0.0	35.5522	2
GTTTTGT	85	1.1683096E-6	33.695217	68
TATCAAC	7560	0.0	33.149166	2
GGAGTTA	40	0.003221981	33.00955	23
GGTATCA	3255	0.0	30.363997	1
ATCAACG	8505	0.0	29.64121	3
TACAGCA	45	0.005800385	29.272326	2
TAGTCCT	45	0.005817922	29.254251	11