EGAF00005757386 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757386
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	533732
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	12941	2.4246250927431747	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	2028	0.3799659754333635	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	1301	0.2437552929185434	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	885	0.16581355436810985	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	861	0.1613169156055848	No Hit
GTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	834	0.15625819699774418	No Hit
GTATCAACGCAGAGTACGGGTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGG	730	0.1367727623601358	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	713	0.13358764323668057	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	636	0.11916092720691282	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	587	0.10998028973342427	No Hit
GTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGC	567	0.10623309076465343	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTTTAG	20	3.871255E-4	108.68754	70
TAGTCAG	25	3.394049E-4	52.160194	24
CGCTAAA	20	0.00881533	49.4354	29
TGGGTAG	25	0.009328015	48.731583	67
GGACTGT	30	4.8979436E-4	48.4221	47
TCAATTG	40	5.6617014E-4	47.01677	69
GTGGTAT	1010	0.0	45.37011	1
CTAACGT	30	8.525691E-4	43.271294	4
TAACGTT	40	7.165146E-5	40.570637	5
GACGGAC	65	2.950219E-7	40.171852	54
TCCCCTA	65	3.5250196E-7	39.27078	48
TAGTCAC	35	0.0017893482	37.21524	22
GTATCAA	8435	0.0	36.525433	1
GACTGTG	40	0.001977111	36.465725	48
GGTATCA	3955	0.0	34.92324	1
ACATTGC	60	2.0824127E-4	33.841377	67
TGCAAGA	45	0.003025831	33.435055	57
CCTCCTA	65	1.694267E-5	33.34116	46
CTAAACC	40	0.0031739655	33.11135	31
ATAGTCA	40	0.0034349053	32.58172	23