EGAF00005757399 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757399
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	111024
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	386	0.34767257529903445	No Hit
CTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGT	324	0.2918287937743191	No Hit
CAATTAAACTATGCAAAAGATTCGCTCGGGGCAAAAATTCGCGCGATTCT	310	0.27921890762357693	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	230	0.20716241533362154	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	209	0.1882475861075083	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	120	0.10808473843493299	No Hit
ATTCTTAGGTAGAATCCATAACCCTTCTTATAAAAGTTTACATTCCGTTGCCTAACTTTTATAAGGTTGCTAGTT	115	0.10358120766681077	No Hit
ATGCAAAAGATTCGCTCGGGGCAAAAATTCGCGCGATTCTTAGGTAGAATCCATAACCCTTCTTATAAAAGTTTA	112	0.10087908920593745	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACTACT	15	0.0022714394	69.5914	41
CCCTTAA	15	0.0027425792	66.36261	8
TACCCGA	35	0.005219527	56.374363	70
GTGCCAA	20	0.0054349364	55.833122	61
TGTTAGA	50	3.2262426E-4	52.616074	70
ATACTGG	20	0.007741251	51.05996	34
GTAGGTT	20	0.008042698	50.56922	31
AAACCGC	20	0.008549159	49.79439	22
GTATTTG	20	0.008564405	49.77196	5
TTCATAC	20	0.008564405	49.77196	3
AGGGTCA	30	7.3341455E-4	44.583145	28
ACCCATC	30	7.600505E-4	44.26168	19
GTGGTAT	120	0.0	41.514034	1
TACACAT	65	1.5834303E-8	40.83853	5
CGGTAGG	35	0.0015586788	38.248848	29
AGTCACC	35	0.0016259691	37.921494	15
GTCTACG	45	1.2458648E-4	36.901363	1
GTATCAA	1105	0.0	36.6676	1
TATACAC	75	5.5873898E-8	35.393394	3
GGTATCA	495	0.0	34.21763	1