EGAF00005757421 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757421
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	723075
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCTCATGAATCTCGTATGCCGT	2873	0.39733084396501056	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2060	0.2848943747190817	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	1933	0.2673304982194102	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1383	0.19126646613421844	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	901	0.12460671437955953	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	885	0.12239394253708122	No Hit
GTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	753	0.10413857483663522	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTACTT	15	0.0016866814	75.05769	58
GTATGCT	20	6.145406E-5	73.689384	52
CTTGAGT	40	1.8198989E-8	57.240635	2
ATCCTTA	20	0.005470816	55.775433	55
CTTATGG	20	0.005753564	55.06969	51
AGGGGGG	1065	0.0	52.70904	70
CTAGTAT	20	0.007367621	51.732494	39
AATCTAG	20	0.0078639705	50.886433	36
CGTTTGC	55	2.3210305E-9	50.817062	41
CTTATAC	995	0.0	50.656418	1
CTAGTTT	20	0.009051544	49.10755	20
ACAGTTG	20	0.009088741	49.056618	10
AAGTACG	140	0.0	46.756153	1
GCGTTTG	30	6.127228E-4	46.27465	40
TATACAC	1105	0.0	45.87814	3
GTGGTAT	1225	0.0	45.687443	1
TTATACA	1135	0.0	44.66859	2
GCTTACG	30	8.1796513E-4	43.639076	1
CTTACGC	30	8.20477E-4	43.611916	2
CGCATAA	30	8.2103605E-4	43.60588	14