EGAF00005757422 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757422
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	723075
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	12326	1.7046641081492238	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	2217	0.30660719842340006	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	1364	0.18863879957127547	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	923	0.1276492756629672	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	891	0.12322373197801058	No Hit
GTATCAACGCAGAGTACGGGTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGG	836	0.1156173287694914	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	749	0.10358538187601563	No Hit
GTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	747	0.10330878539570583	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	731	0.10109601355322753	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCTAG	20	0.008978476	49.208397	10
CGTACGT	20	0.00898093	49.20499	13
CCCTCCA	65	7.645597E-4	44.23443	70
CTAACGT	30	8.091933E-4	43.73474	4
ATGAGTG	30	8.091933E-4	43.73474	5
GTGGTAT	1250	0.0	42.82886	1
CAATACG	85	5.6104516E-5	42.28291	70
GATTGTA	35	0.0017257951	37.49211	9
TAAGCGC	35	0.0017269681	37.486927	14
GTATCAA	10130	0.0	37.124016	1
CATGCGA	155	3.729656E-8	37.099842	70
ACACTAA	40	0.002273803	35.443577	44
GTATAAG	75	6.1927494E-8	35.03383	1
GAGCTTA	45	0.0027932646	33.986923	64
GGTATCA	4845	0.0	33.28485	1
TATCAAC	11380	0.0	33.176765	2
ATTCGGG	40	0.00328986	32.871532	20
CCAAACC	40	0.0033235115	32.80333	3
CCAATGT	105	1.1383236E-8	31.826319	57
GTCTGAC	50	0.0039939187	31.59434	67