EGAF00005757483 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757483
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	563517
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGT	7223	1.2817714461143142	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATGTCGTATGCCGT	1526	0.2707992837838078	No Hit
ATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTT	1303	0.23122638713650162	TruSeq Adapter, Index 3 (95% over 21bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	882	0.15651701723284303	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	862	0.15296787852008012	No Hit
ACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTTCT	753	0.13362507253552244	RNA PCR Primer, Index 3 (95% over 23bp)
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	653	0.11587937897170804	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2010	0.0	68.44133	70
TAATAAG	20	0.005723421	55.141087	53
TCCGTGT	20	0.0062704016	53.883625	46
CTTATAC	2115	0.0	53.146564	1
TTAGGGT	40	0.007154739	52.10874	70
ATTCCGT	55	1.9826984E-9	51.723766	44
TTATACA	2230	0.0	50.530773	2
TATACAC	2280	0.0	50.14309	3
CTTGTAT	80	0.0	49.30481	16
CTCCTAC	20	0.008911411	49.30043	1
TCCTACA	20	0.008927056	49.278557	2
TTGAGTA	40	1.1572629E-6	49.278557	3
CGTATGG	100	0.0	48.99808	41
ATTCTGC	45	1.2526107E-6	48.71437	51
TGTTATG	30	4.822517E-4	48.575336	50
CATATAC	35	3.0253674E-5	46.952793	1
TTGTATC	85	0.0	46.40865	17
AATGTCG	405	0.0	44.607162	36
AAGGGGG	2015	0.0	43.467865	69
GTATGGC	115	0.0	42.862328	42