EGAF00005757489 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757489
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	715394
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT	3216	0.4495424898727135	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	2364	0.33044727800344986	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1951	0.27271685253161193	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1555	0.21736273997265843	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1200	0.1677397350271319	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	981	0.13712723338468033	No Hit
GTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	965	0.13489070358431857	No Hit
CTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGCCTGT	793	0.11084800823042966	No Hit
TAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTT	720	0.10064384101627914	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTAAA	20	0.0045247013	58.515873	65
TGTATAG	25	3.392255E-4	52.168262	2
AGGGGGG	825	0.0	51.41497	70
CAGTGTA	30	4.25313E-4	49.830357	55
CTTATAC	650	0.0	48.182262	1
TATACAC	680	0.0	47.46929	3
TGCTAAT	55	4.280082E-9	47.425694	2
TTATACA	700	0.0	45.181442	2
GTGGTAT	1135	0.0	43.6895	1
ACATAAG	35	8.252195E-4	43.559826	61
ATACGGG	225	0.0	43.49788	1
ATACACA	775	0.0	41.650467	4
CTCGTAT	615	0.0	41.408905	39
ATATCGT	100	0.0	40.812206	37
GTATGCC	830	0.0	40.205437	42
AGACAAG	800	0.0	39.68077	25
ATATCAA	280	0.0	39.61414	1
TACACAT	815	0.0	39.606277	5
CTTGAAA	845	0.0	39.556362	57
GTCTTCT	735	0.0	39.312622	49