EGAF00005757499 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757499
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	562165
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	54

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT	6656	1.183994023107095	No Hit
ATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTT	1102	0.19602785659014704	TruSeq Adapter, Index 1 (95% over 21bp)
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	939	0.167032810651677	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	934	0.16614339206460738	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	768	0.13661469497389556	No Hit
ACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCT	690	0.12273976501560929	RNA PCR Primer, Index 1 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATGTCGTATGCCGT	605	0.10761964903542555	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACAT	20	4.6068575E-4	104.039604	70
GTATTCT	15	0.0019371482	72.4816	49
GTATGAC	20	7.7689416E-5	70.28102	42
CGTATGA	20	8.0054364E-5	69.85684	41
TGAGTAC	20	1.0696058E-4	65.886505	4
TTGAGTA	20	1.0696058E-4	65.886505	3
AATTATG	35	0.0042467704	59.451202	70
GCTCACA	30	1.784569E-4	59.405907	69
AGGGGGG	1235	0.0	58.4082	70
GAACAAT	20	0.0057833274	54.99619	53
GATTGAT	20	0.0061377375	54.17567	48
GCGTATG	40	7.868821E-7	52.11251	40
GTTAACT	20	0.0074421405	51.59947	38
CTTATAC	1215	0.0	50.711807	1
CACTCTA	20	0.008093688	50.515682	33
CTAGCGC	20	0.008216562	50.323505	32
CATAAGG	20	0.0084724855	49.93452	29
CTACAAT	45	2.2115495E-5	49.504925	69
GTAACAA	20	0.008823919	49.42367	1
CGCGTAT	35	2.2454931E-5	49.38084	39