EGAF00005757520 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757520
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	441019
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1886	0.42764597443647556	No Hit
GGGCAGCGCTGGGTGCTTTATTTCCATGCTGGGCGCCCGGGAAGTATGTA	939	0.21291599681646367	No Hit
GTATGTACAGGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC	888	0.20135186919384424	No Hit
GTACAGGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCCGGGGAGCGGGGGCTTGCCGGCCGTCGCA	586	0.13287409385990173	No Hit
GCCCAGGGCAGCGCTGGGTGCTTTATTTCCATGCTGGGCGCCCGGGAAGT	528	0.11972273303417766	No Hit
GGCCCAGGGCAGCGCTGGGTGCTTTATTTCCATGCTGGGCGCCCGGGAAG	523	0.11858899503196006	No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT	456	0.10339690580224434	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	255	0.0	49.62125	1
GTATCAA	2100	0.0	41.852367	1
TCAGCGA	35	0.0011142587	40.97831	65
GGTATCA	875	0.0	40.647278	1
TGGTATC	350	0.0	36.115707	2
TATCAAC	2460	0.0	35.413395	2
ATCAACG	2595	0.0	33.81903	3
TCAACGC	2615	0.0	33.687138	4
CAACGCA	2625	0.0	33.562614	5
AACGCAG	2715	0.0	32.450043	6
GCTATCT	70	3.6739794E-4	30.718369	69
CGCAGAG	2925	0.0	30.47399	8
CGAATTA	45	0.0048545636	30.357227	15
AGAGTAC	2975	0.0	29.96182	11
CAGAGTA	3030	0.0	29.530672	10
GCAGAGT	3065	0.0	29.193453	9
GAGTACG	2240	0.0	28.815653	12
CGAGCGG	50	0.007335703	27.89743	48
CGGCGAC	50	0.007339852	27.894197	47
AGTACGG	2280	0.0	27.860748	13