EGAF00005757545 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757545
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	778525
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2761	0.3546450017661604	No Hit
GTATTATAGTACTCCTCCACTCACTTTCGGCGGAGGGACCAAGGTAGAGATCAAACGAACTGTGGCTGCACCAT	1611	0.20692977104139237	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1478	0.18984618348800616	No Hit
CTTTTATACAGCTCCAACAATGAGAACTACTTAGCTTGGTACCAGCAGAA	1470	0.18881859927426867	No Hit
CCTTAGGAGGCTGTCCTGGTTTCTGCTGGTACCAAGCTAAGTAGTTCTCATTGTTGGAGCTGTATAAAAGACT	1058	0.13589801226678655	No Hit
CTCCTAAGGTGCTCATTTCCTGGGCATCGACCCGGGAGTCCGGGGTCCCT	901	0.11573167207218778	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	894	0.11483253588516747	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGTATC	625	0.0	42.655685	2
GGTATCA	2105	0.0	42.560513	1
GTGGTAT	645	0.0	40.82147	1
GTATCAA	5410	0.0	39.251114	1
TATCAAC	6235	0.0	34.316284	2
TCAACGC	6570	0.0	32.826633	4
ATCAACG	6575	0.0	32.80167	3
CAACGCA	6740	0.0	32.15079	5
AACGCAG	6885	0.0	31.52333	6
CGATTGT	85	0.006060128	29.010334	70
ACGCAGA	7495	0.0	28.910263	7
CGCAGAG	7615	0.0	28.366745	8
GACCGTT	50	0.0072462014	27.970383	49
TCGTATG	75	6.0388564E-5	27.6812	40
AGAGTAC	7860	0.0	27.357355	11
GCAGAGT	7925	0.0	27.25713	9
CCTGTCG	305	0.0	27.227411	40
CAGAGTA	8050	0.0	26.796589	10
CCTCGCA	65	9.125973E-4	26.298475	16
ACGAGAC	105	8.283678E-7	26.05806	22