EGAF00005757605 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757605
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	493562
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGT	4861	0.9848813320312342	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	1706	0.34565059708810647	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1397	0.28304448073393007	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1156	0.2342157621534883	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	829	0.1679626875650881	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	794	0.16087137988743055	No Hit
ATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTT	593	0.12014701293859738	RNA PCR Primer, Index 39 (95% over 23bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	587	0.11893136019385608	No Hit
GTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	535	0.10839570307276492	No Hit
GTATCAACGCAGAGTACGGGTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGG	514	0.10414091846617042	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	510	0.10333048330300955	No Hit
TAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTT	499	0.10110178660431719	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	905	0.0	65.569115	70
CTTATAC	1025	0.0	54.037796	1
TTATACA	1010	0.0	53.856525	2
GTATGCC	1020	0.0	53.234123	42
TTCTGCT	1000	0.0	53.085655	52
TAGTTAC	20	0.006749646	52.888443	42
TATACAC	1045	0.0	52.668724	3
CGTATGC	1045	0.0	52.541225	41
CTCGTAT	925	0.0	52.385437	39
TCGTATG	1025	0.0	52.370884	40
TCTGCTT	1050	0.0	52.245922	53
TCTCGTA	875	0.0	52.228394	38
CTTGAAA	1140	0.0	51.855396	57
GTCTTCT	1045	0.0	50.756214	49
CCGTCTT	1070	0.0	50.30489	47
TACACAT	1125	0.0	49.781696	5
ATACACA	1120	0.0	49.71656	4
CAACATA	20	0.009080688	49.06518	30
TACATCT	890	0.0	49.0145	34
TGCTTGT	125	0.0	48.918434	14