EGAF00005757606 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757606
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	493562
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9882	2.002180070588903	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	2081	0.42162889363443706	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	960	0.1945044391586062	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	724	0.14668876453211552	No Hit
GTATCAACGCAGAGTACGGGTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGG	718	0.14547311178737424	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	701	0.14202876234394057	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	601	0.1217678832649191	No Hit
TAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTT	561	0.11366353163331051	No Hit
GTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	560	0.1134609228425203	No Hit
GTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGC	558	0.11305570526093986	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	531	0.10758526790960407	No Hit
TTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCC	505	0.10231743934905847	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCACTAA	10	0.0073407283	143.30527	70
ATCCATA	20	0.005039908	56.94038	59
TGTACTA	25	0.0077524115	51.066082	68
ATAAGTG	20	0.008215299	50.324406	34
TACGAAC	20	0.009393832	48.646072	2
CCGGTAA	35	4.7921189E-4	48.634365	68
TAGAACG	60	5.2314205E-4	47.76842	70
CAGGTAC	35	3.2635013E-5	46.35309	1
GTGGTAT	950	0.0	45.426025	1
AGAGAAT	65	7.760912E-4	44.09393	70
CTGTAAG	30	8.5289625E-4	43.26727	16
ATTGTCC	35	0.0012216866	40.219242	42
CCGTCTA	50	9.774102E-5	38.485382	62
CCTTATG	50	1.1211967E-4	37.598896	56
ACGTCTG	35	0.0018082376	37.135197	18
TCTGTAA	35	0.0018236233	37.07119	15
ACATTTC	35	0.0018254402	37.063675	7
TATAGGC	35	0.0018254402	37.063675	2
AACCAGT	80	0.0021540024	35.826317	70
GTAAATG	40	0.0021574916	35.822308	45