EGAF00005757641 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757641
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1580272
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAATGCTTACCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCAT	4237	0.2681183998704021	No Hit
AGTCAGGACATTGCCAATTATTTAGCCTGGTTTCAGCAGAAACCAGGGCAGGCCCCTAGGTCCCTGATCTATG	3373	0.21344426782224832	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	3075	0.19458675468526937	No Hit
GCATTATACTGTTGGCAGTAATAAATTGCAAGATCTTCAGGTTGCAGGCTGCTGATGGTGAGAGTGAAATCTGTC	3065	0.19395395223100834	No Hit
GATCTATGCTGCGTCCAGTTTGCAAAGTGGGGTCCCATCAAAGTTCAGCGGCAGTGGATCTGGGACAGATTTCA	2502	0.15832717405611185	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	2190	0.13858373748316746	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	2083	0.13181275122257435	No Hit
AGTCAGGACACAGCATGGACATGAGAGTCCTCGCTCAGCTCCTGGGGCTC	1990	0.12592768839794669	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	1926	0.12187775269067602	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	1867	0.1181442182105359	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1751	0.11080370974110787	No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC	1750	0.11074042949568176	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	1669	0.10561472961616734	No Hit
GTTGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGACATTGCCAATTATTTAGCCTGGTTTCAGCAGAAA	1658	0.1049186469164802	No Hit
GCATAGATCAGGGACCTAGGGGCCTGCCCTGGTTTCTGCTGAAACCAGGC	1610	0.10188119513602721	No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT	1586	0.10036246924580072	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	2270	40.6479	1
GTATCAA	5205	37.240616	1
GTGGTAT	895	36.545147	1
TCGTATG	160	34.605743	40
TGGTATC	925	34.23569	2
TATCAAC	5975	32.37661	2
ATCAACG	6200	31.146132	3
TCAACGC	6230	30.996151	4
CAACGCA	6450	30.205753	5
AACGCAG	6530	29.783928	6
CGTATGC	200	27.701344	41
ACGCAGA	7105	27.41592	7
CGCAGAG	7235	27.066011	8
AGAGTAC	7245	26.93365	11
ACGAGAC	270	26.773321	22
CAGAGTA	7430	26.216707	10
GCAGAGT	7695	25.403305	9
AATCTCG	210	24.662676	36
TATACAC	475	23.914059	3
AGTACGG	5140	23.56765	13