EGAF00005757658 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757658
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	629570
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	18020	2.8622710739075874	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	1727	0.2743142144638404	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	1247	0.1980716997315628	No Hit
GTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	931	0.14787871086614673	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	891	0.14152516797179027	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	853	0.13548930222215164	No Hit
GTATCAACGCAGAGTACGGGTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGG	726	0.11531680353256984	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	723	0.11484028781549312	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	655	0.10403926489508711	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	633	0.10054481630319106	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAGATT	20	0.004653567	58.101322	64
GAGTCTA	20	0.009221699	48.875885	1
GTGGTAT	1120	0.0	45.38475	1
GTAGTAA	50	5.6860827E-6	39.100708	1
CGATTCT	40	0.0017712532	37.29257	55
CATTAAT	35	0.0017840505	37.23877	1
GTATCAA	8660	0.0	37.06139	1
CTTGTAT	80	2.8630893E-9	36.65983	16
TTAGATC	105	3.274181E-11	34.10571	3
TATCAAC	9610	0.0	33.44421	2
GATTCTT	45	0.0030964322	33.27917	56
GTTGCAC	45	0.0031565041	33.14895	55
ATCCGTG	40	0.003404913	32.64102	21
TCTGACT	50	2.5829006E-4	32.625427	20
GTCATAT	40	0.0034342417	32.583923	1
TCATATG	40	0.0034449561	32.563213	2
TAGTAAT	50	2.612005E-4	32.56321	2
GACTTAG	50	2.6144425E-4	32.558037	12
GTAATGT	50	2.6156622E-4	32.555447	4
AATATGG	90	0.0035474882	32.362633	70