EGAF00005757668 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757668
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	348069
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	11140	3.200514840448302	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	1042	0.2993659303184139	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	567	0.16289873559552848	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	475	0.1364671947228854	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	444	0.12756091464623395	No Hit
GTATCAACGCAGAGTACGGGTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGG	418	0.12009113135613915	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	396	0.11377054549528973	No Hit
GTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	359	0.10314046927477023	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGATT	15	0.0016397226	75.58391	59
TACGTCA	15	0.0029456585	65.20687	5
CTTACGT	15	0.0029456585	65.20687	3
AGGATTG	20	0.0050405	56.9346	60
ATAGGAT	20	0.005216407	56.44338	58
CTAGAAT	20	0.005571087	55.513096	53
GTGGTAT	570	0.0	53.813484	1
TCGGTAG	25	3.207067E-4	52.757084	29
GTCGGTA	25	3.2394333E-4	52.649914	28
CGTCTAA	20	0.008866593	49.35929	28
CCGTCTA	20	0.008953347	49.23784	27
ACAGAGG	30	8.33034E-4	43.47125	3
CTAAGGA	35	9.5321017E-4	42.29569	53
GCGTCTA	45	6.22056E-5	41.547955	56
CGTACAA	45	0.0010486956	41.479565	69
CATACGA	40	6.983703E-5	40.742577	13
CCGTCCG	35	0.0011524843	40.69524	44
TTGTATC	65	1.8497303E-8	40.173508	17
GCTTATC	50	5.6220288E-6	39.1579	1
TCGTAAA	35	0.0017354421	37.44409	26