EGAF00005757679 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757679
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	561044
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCTCATGAATCTCGTATGCCGT	3343	0.5958534446496175	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1665	0.2967681679155289	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	1518	0.27056701435181557	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1164	0.20747035883103643	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	776	0.1383135725540243	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	731	0.13029281125901	No Hit
GTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	663	0.11817254974654395	No Hit
ATACACATCTCCGAGCCCACGAGACGCTCATGAATCTCGTATGCCGTCTT	610	0.108725875332416	TruSeq Adapter, Index 8 (95% over 22bp)
CTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGCCTGT	601	0.10712172307341314	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTCAC	20	0.004159722	59.76982	66
GTTAACG	20	0.0051740035	56.56511	56
CTTATAC	1040	0.0	54.96447	1
CTAGTAT	45	3.106652E-8	53.483894	39
TTATACA	1080	0.0	52.919315	2
ACATATG	25	3.457152E-4	51.96641	1
TATACAC	1135	0.0	51.213264	3
AGGGGGG	1240	0.0	49.247154	70
TCTTATG	60	3.1377567E-9	49.11091	50
CGAATAA	20	0.009205269	48.897236	25
ACGAATA	20	0.009247653	48.840424	24
GGTCTAG	20	0.009303297	48.76633	19
ATATCAA	195	0.0	48.30211	1
GTGGTAT	770	0.0	48.085796	1
TGTGCTT	140	0.0	48.022102	53
TAAAGTC	35	3.2486394E-5	46.39031	3
TAGAGAT	60	6.128252E-4	46.262478	70
GAATGAG	75	3.297197E-5	46.262478	70
TTATGCT	65	5.9135346E-9	45.716778	52
ATATGCT	80	1.8189894E-12	44.650673	4