EGAF00005757685 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757685
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	464321
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGT	4876	1.0501355743117369	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1233	0.2655490490415036	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	1166	0.25111937646585014	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATGTCGTATGCCGT	1010	0.21752192987179128	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	932	0.20072320657476186	No Hit
ATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTT	779	0.16777186472289643	TruSeq Adapter, Index 3 (95% over 21bp)
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	686	0.14774261771489983	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	650	0.13998936080857854	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCACCTA	35	3.7186655E-5	81.52268	70
AGGGGGG	1165	0.0	65.51554	70
TATGGCG	50	1.2732926E-11	63.83477	43
ATATCAA	185	0.0	61.15061	1
CATAGTA	20	0.004920181	57.28657	58
CGTTAAA	20	0.0049849786	57.097553	57
GACCGTT	20	0.0053054215	56.205967	53
CTATGAT	40	0.006445208	53.499256	70
AAGTACG	165	0.0	50.932373	1
ACTAAAG	20	0.0080221025	50.627743	35
CTTATAC	1395	0.0	49.120884	1
TAGATGT	25	0.009152433	48.965176	67
ACACACG	20	0.009542723	48.452374	6
TAGGACA	20	0.009542723	48.452374	5
CAGAGTT	20	0.009542723	48.452374	10
CTAGATG	25	0.009793361	48.13359	66
TTATACA	1445	0.0	47.390556	2
TAGTACG	35	3.338279E-5	46.174953	1
TCCACGT	35	6.4141245E-4	45.84152	66
TATCGTA	135	0.0	45.68616	38