EGAF00005757687 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757687
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	489657
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGT	3233	0.6602580990366727	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1611	0.3290058142740735	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	1337	0.2730482766507984	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1093	0.22321747672350237	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	799	0.16317544730290795	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	626	0.1278445932560956	No Hit
ATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGTCTT	560	0.11436577032494175	TruSeq Adapter, Index 12 (95% over 22bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	493	0.10068272280392193	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	815	0.0	55.009876	70
ATATCAA	175	0.0	53.79646	1
CTTATAC	665	0.0	53.698826	1
AGAGATC	20	0.006473243	53.450474	44
TATACAC	700	0.0	51.003464	3
TTATACA	720	0.0	49.586704	2
CTTGAAA	755	0.0	49.14582	57
GCTTGAA	755	0.0	48.98243	56
AGCTAGT	20	0.0093565	48.695072	1
CTAGAAT	20	0.009364055	48.685127	3
ATACGGG	95	0.0	47.840775	1
TATGCCG	830	0.0	46.385136	43
GTATGCC	825	0.0	45.947067	42
ATACACA	785	0.0	45.480797	4
TACACAT	790	0.0	45.192947	5
CTATCAG	35	6.940199E-4	45.11475	65
GACTGAC	30	7.5016863E-4	44.40949	33
CTCGTAT	620	0.0	44.400803	39
CGTATGC	835	0.0	44.277397	41
GTGGTAT	625	0.0	44.150196	1