EGAF00005757731 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757731
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	584614
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGT	3263	0.5581460587669813	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	1589	0.2718032753235468	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1288	0.22031631127547407	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	982	0.1679740820438785	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	794	0.13581611114342113	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	774	0.13239505040932992	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	677	0.11580290584898753	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	618	0.10571077668341845	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	615	0.10519761757330477	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGA	25	2.3926981E-4	55.986706	41
GATTATA	30	3.5113085E-4	51.8016	61
GGATATA	25	0.0076958355	51.162285	68
AGGGGGG	735	0.0	49.649788	70
ATACGGG	85	0.0	49.347523	1
AGCTAGT	20	0.009585958	48.398537	1
GGGTCTA	60	1.891749E-10	48.373688	18
CTAGATA	20	0.009611923	48.36541	4
CTTATAC	615	0.0	48.26737	1
CACTGAT	40	5.5066374E-4	47.283344	69
TTATACA	650	0.0	46.133156	2
TGTGCAC	35	3.39303E-5	46.050476	11
TATACAC	660	0.0	45.434174	3
TTAGATC	65	4.1472958E-10	44.64499	3
CTTGAAA	690	0.0	44.349976	57
CTTTCAC	55	2.7351962E-6	43.49045	65
GAACTCA	30	8.593723E-4	43.202145	26
CATCGTA	30	8.784546E-4	43.009872	21
GGTCTAG	30	8.7956566E-4	42.998833	19
GTGGTAT	925	0.0	42.904644	1