EGAF00005757754 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757754
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	629565
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9100	1.4454424880671575	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	2039	0.3238744212273554	No Hit
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	1120	0.17790061391595785	No Hit
GTATCAACGCAGAGTACGGGTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGG	782	0.12421275007346343	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	708	0.11245860236830192	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	696	0.11055252436205952	No Hit
GTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	659	0.10467545050947877	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAGTA	25	3.06922E-4	53.235416	29
CGAAACT	20	0.007661656	51.22223	38
CTATATA	20	0.008860812	49.372196	1
TCTGTAG	45	5.3487136E-5	42.632847	65
ATCTGTA	45	5.6267334E-5	42.268295	64
GTGGTAT	1080	0.0	42.057796	1
TCATATG	55	2.138022E-7	41.85826	2
GTATAAG	40	6.598031E-5	41.143497	1
GTATCAA	8045	0.0	37.02659	1
CGTTTAC	45	1.2520206E-4	36.903748	28
AATCATT	40	0.0018892155	36.806244	55
ATTGCGA	40	0.0019308389	36.643257	53
TGACTAA	45	1.3290315E-4	36.53131	6
ATAAGAG	45	1.3308969E-4	36.522602	3
AGTATCA	65	7.919716E-7	35.418526	2
GGTATCA	3915	0.0	35.310894	1
CAAGGTT	55	1.6407993E-4	35.244225	66
GAGTCAA	40	0.00264407	34.369415	39
TTAGATC	115	1.8189894E-12	34.299488	3
ACTAGAG	40	0.0028642674	33.81326	35