EGAF00005757769 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757769
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	149624
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGT	766	0.5119499545527455	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	520	0.34753782815591083	No Hit
CTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGGCAGCACTTCC	459	0.3067689675453136	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	352	0.2352563759824627	No Hit
ATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGTCTT	294	0.1964925413035342	TruSeq Adapter, Index 12 (95% over 22bp)
GTATCAACGCAGAGTACGGGCTAGTCCCTGTTCCCAGAGCCCACTTTTTTTTCTTTTTTTGAAATAAAATAGC	257	0.1717638881462867	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	247	0.16508046837405763	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	214	0.14302518312570175	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	213	0.14235684114847885	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	209	0.1396834732395872	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	174	0.11629150403678554	No Hit
GTATCAACGCAGAGTACGGGTTCTAATACGACTCACTATAGGGAAGTGATACCAGCATCGTCTTGATGCCCTTGG	173	0.11562316205956263	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	167	0.1116131101962252	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	152	0.10158798053788162	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	152	0.10158798053788162	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTGT	15	0.0027508298	66.32227	33
AATAGGG	20	0.0031949747	63.85489	67
CTCTTAT	15	0.003249946	63.59123	1
TAACGGG	15	0.0032542613	63.569946	21
CCCTACA	15	0.0032672333	63.506184	2
ACGTTGT	15	0.003271566	63.48496	15
GACCAGT	20	0.0047287056	57.840134	55
AAATCCG	20	0.005160942	56.576748	51
AAGTACG	75	0.0	55.1124	1
GGTCAAA	20	0.005744014	55.06774	47
CCAGGGA	40	0.0059355646	54.582474	70
ATACGGG	70	0.0	54.50677	1
GGTAGAA	20	0.006644891	53.07759	42
CGTTCCA	25	0.008333633	50.117943	66
ATATCAA	70	0.0	49.96454	1
TGCGACG	25	0.009554482	48.4147	63
TTCGGTT	25	0.009554482	48.4147	63
CTTATAC	115	0.0	44.237377	1
CCAGTCG	45	4.845276E-5	43.319424	57
GCCGTAT	35	0.0011433617	40.743675	43