EGAF00005757787 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757787
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	335098
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1296	0.38675253209508864	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGACGTCATCTCGTATGCCGT	1268	0.3783967675127873	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	633	0.18889996359274003	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	612	0.18263314015601406	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	601	0.17935051835582427	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	513	0.1530895439543059	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	469	0.13995905675354672	No Hit
CCTCCAACATTAGCATAATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTG	429	0.12802225020740202	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGACGTCATGTCGTATGCCGT	418	0.12473962840721221	No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC	364	0.10862493956991685	No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG	363	0.10832651940626324	No Hit
ATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTGAAAGATGAGCTGGAGGA	360	0.10743125891530239	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	349	0.1041486371151126	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGGAA	15	0.0015366441	76.83011	67
GGTCGGA	20	0.0051303264	56.680973	66
CGTGGCG	20	0.006347243	53.713005	53
TCGTGGC	20	0.006399519	53.601765	52
AGACGAT	35	2.698791E-5	47.862053	19
TGTCGTA	95	0.0	47.04128	38
CTTATAC	410	0.0	43.315792	1
CGCGTAT	40	5.0094728E-5	43.10252	39
GTGGTAT	205	0.0	42.498512	1
GGTATCA	945	0.0	42.195816	1
ATGTCGT	115	0.0	41.75984	37
TTATACA	410	0.0	41.656338	2
CGGGAAT	65	1.4730176E-8	41.222683	17
GTATCAA	2500	0.0	40.4782	1
TGGCGTC	35	0.0012364862	40.117237	45
TATACAC	480	0.0	36.273716	3
TGCCGTC	350	0.0	36.105515	45
TATCAAC	2885	0.0	36.100178	2
TGCGTGA	60	1.0020589E-5	35.99254	55
TCGTATG	355	0.0	35.0593	40