FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005757803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005757803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155350
Sequences flagged as poor quality0
Sequence length20-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT2850.1834567106533634No Hit
GTATTACTGTCACCAGTATAATCAGTGGCCTCCTTTGTACACTTTTGGCC2630.16929514000643708No Hit
CAGTAATACACTGCAAAATCTTCAGACTGTAGGCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA2100.13517862890247828No Hit
GTATAATCAGTGGCCTCCTTTGTACACTTTTGGCCAGGGGACCAAGCTGG2000.1287415513356936No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC1990.12809784357901513No Hit
GTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA1850.11908593498551658No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC1820.11715481171548119No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG1730.11136144190537496No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC1620.10428065658191182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)