FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005757804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005757804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155350
Sequences flagged as poor quality0
Sequence length20-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4840.3115545542323785No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT2870.1847441261667203No Hit
GTATTACTGTCACCAGTATAATCAGTGGCCTCCTTTGTACACTTTTGGCC2440.15706469262954617No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC2040.13131638236240747No Hit
GTATAATCAGTGGCCTCCTTTGTACACTTTTGGCCAGGGGACCAAGCTGG1960.12616672030897974No Hit
CAGTAATACACTGCAAAATCTTCAGACTGTAGGCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA1950.12552301255230125No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT1750.11264885741873189No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC1650.10621177985194721No Hit
GTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA1590.1023495333118764No Hit
GTGTATTACTGTCACCAGTATAATCAGTGGCCTCCTTTGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAA1580.10170582555519794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)