EGAF00005757840 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005757840
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66281
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	348	0.5250373410177879	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	93	0.14031170320302952	No Hit
GTATGTACAGGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC	92	0.1388029752115991	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	91	0.1372942472201687	No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT	85	0.12824187927158612	No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT	78	0.11768078333157315	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	74	0.11164587136585145	No Hit
GTGTATTACTGTGCGAGACCGGATATTTTGAGTGGTTATGCTTATGACTA	73	0.11013714337442103	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	71	0.10711968739156018	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	68	0.10259350341726889	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGGGG	50	2.934925E-4	53.5707	70
GACCGAG	20	0.0075651645	51.33518	33
AGCAATC	20	0.0076340195	51.217796	31
GTATCAA	160	0.0	50.907387	1
CAGCGCT	20	0.007937792	50.715282	9
AGCGCTG	20	0.007937792	50.715282	10
TATCAAC	180	0.0	45.182552	2
CGGTTCG	35	8.9995336E-4	42.736465	67
TCAACGC	190	0.0	42.707607	4
ATCAACG	200	0.0	42.294655	3
ACCGGTT	35	0.0010372108	41.523346	65
TCACCGG	35	0.0010750566	41.222454	63
GGAACCC	35	0.0010965505	41.057163	61
CAACGCA	200	0.0	40.572227	5
CGCAGAG	195	0.0	39.878685	8
AACGCAG	205	0.0	39.58266	6
GTTCGGG	45	0.0013294505	39.4657	69
GTTATGC	35	0.0013717278	39.232403	35
GTCATAA	35	0.0014511084	38.78658	1
ACCGGAT	35	0.0014728796	38.6694	18