FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005758126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005758126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences975659
Sequences flagged as poor quality0
Sequence length20-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT20510.21021688930251245No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20310.2081669927710399No Hit
GTTAGGACCCGGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTC17440.17875097754440844No Hit
GTATAATAATTGGCGAGGCACCTTCGGCCAAGGGACACGACTGGACATTAAACGAACTGTGGCTGCACCAT14530.1489249830114825No Hit
TTATTATACTGCTGACAGTAATAAACTGCAGAATCTTCAGACTGCAGGCTGCTGATGGTGAGAGTGAACTCTGTC13740.14082789171216584No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT12470.127811048737315No Hit
GTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATT11870.12166135914289727No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC11740.12032892639744008No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG11670.11961146261142469No Hit
GTCCCAGACCCACTGCCACTGAACCTGGCTGGGATACCAGTGGCCCTGGT11570.11858651434568841No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC11290.11571665920162678No Hit
CATCTATGGTGCGTCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCA11030.11305179371071244No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC10900.11171936096525528No Hit
CTCCTGTAGGGCCAGTCAGAGTGTGCACAGCTATTTAGTCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCT10630.1089520006477673No Hit
GAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTCTGCAGTTTATTACTGTCAGCAGTATAATAATTGG10290.10546717654426392No Hit
GAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGCCTC10030.10280231105334958No Hit
GTGTAAGGATCACCTGGTTTTTGGAGGCGTCCTTGGTGATGTTGAGTCTG9830.100752414521877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)