EGAF00005758282 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005758282
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	164511
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	477	0.28995021609497235	No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA	266	0.16169131547434518	No Hit
GGGCAGCGCTGGGTGCTTTATTTCCATGCTGGGCGCCCGGGAAGTATGTA	254	0.15439697041535216	No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC	248	0.15074979788585566	No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC	240	0.1458869011798603	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT	212	0.12886676270887662	No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT	209	0.12704317644412835	No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA	188	0.11427807259089058	No Hit
GTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCAGGCGGTGCCTC	184	0.1118466242378929	No Hit
GCCCAGGGCAGCGCTGGGTGCTTTATTTCCATGCTGGGCGCCCGGGAAGT	174	0.10576800335539874	No Hit
GTATCAACGCAGAGTACGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCC	170	0.10333655500240106	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	60	6.0572347E-9	45.558193	1
GGTATCA	295	0.0	45.172108	1
GTATCAA	870	0.0	45.16545	1
ACGGGTA	40	5.3037562E-5	42.671837	16
TCGCACT	50	3.1074032E-6	42.66481	63
TAATTCG	35	0.0012353946	40.112217	51
TATCAAC	1040	0.0	37.736687	2
ATCAACG	1090	0.0	36.620697	3
CAACGCA	1110	0.0	35.971798	5
TCAACGC	1115	0.0	35.81049	4
AACGGAA	80	5.2014002E-8	35.70102	65
CAACGGA	90	3.7071004E-9	35.666985	64
AACGCAG	1125	0.0	35.492172	6
ATTCGGG	40	0.002358455	35.16416	53
AATTCGG	40	0.0023693552	35.131145	52
TAATCTA	40	0.002719449	34.15825	20
CTAAGTA	40	0.0027316504	34.12709	9
TAAGTAC	40	0.0027316504	34.12709	10
AGGGAAG	60	1.4387677E-5	34.12709	5
ATCCAAT	85	1.04961146E-7	32.96144	49