EGAF00005758310 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005758310
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55142
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	174	0.3155489463566791	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	95	0.17228247071197997	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	85	0.15414747379492943	No Hit
ATATGATACTCTCCCTCTCACTTTCGGCGGAGGGACCAAGGTGCAGATCAAACGAACTGTGGCTGCACCAT	68	0.12331797903594358	No Hit
GTATCATATTGTTGACAGTAATATGTTGCAATATCTTCAGGCTGCAGGCTGCTGATGGTGAAAGTAAAATCTGTC	59	0.10699648181059808	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	59	0.10699648181059808	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	57	0.10336948242718799	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	56	0.10155598273548293	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAGCAG	20	0.007941537	50.697823	5
AAGCTAC	20	0.007941537	50.697823	17
GTATCAA	415	0.0	42.42699	1
GGTATCA	180	0.0	41.384445	1
ACGGGAA	75	1.027729E-9	40.558258	16
TATCAAC	485	0.0	36.237617	2
CTACGCC	40	0.0021325296	35.84793	59
TCTACGC	40	0.0021426405	35.81346	58
GAAGTCA	50	0.0024585894	34.80935	69
TCAACGC	510	0.0	33.798546	4
ACGCCTG	45	0.0037099721	32.01891	61
CAACGCA	550	0.0	31.95499	5
AACGCAG	550	0.0	31.95499	6
ATCAACG	540	0.0	31.92085	3
TACGCCT	45	0.003780912	31.895525	60
TACGGGT	65	2.6259027E-5	31.19866	15
AGAGTAC	595	0.0	30.674313	11
CAGAGTA	595	0.0	30.674313	10
CGCAGAG	590	0.0	30.361408	8
ACGCAGA	595	0.0	30.10627	7