EGAF00005758338 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005758338
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2142724
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	4215	0.19671222238608427	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3318	0.1548496213231382	No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA	2828	0.13198153378596592	No Hit
GTCTGGGACAGACTTCGCTCTCACCATCAGCAGACTGGAGCCTGAAGATT	2558	0.11938075085731993	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	2466	0.11508715074829982	No Hit
GTATCACTGTCAGCAGTATGGTAACTCACCTGAAACTTTTGGCCAGGGGA	2308	0.10771335925672182	No Hit
GTATGGTAACTCACCTGAAACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCAT	2247	0.10486651570617589	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	2201	0.10271971565166582	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	2143	0.10001288080032705	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	5880	40.754025	1
TATCAAC	6605	36.146973	2
GGTATCA	2380	34.958553	1
ATCAACG	6870	34.833954	3
TCAACGC	6895	34.60241	4
CAACGCA	7130	33.55823	5
AACGCAG	7150	33.416348	6
ACGCAGA	7780	30.666273	7
CGCAGAG	7870	30.27196	8
TGGTATC	1255	29.836147	2
AGAGTAC	8090	29.235893	11
GTGGTAT	1330	28.435186	1
CAGAGTA	8485	27.875532	10
GCAGAGT	8640	27.574112	9
GAGTACT	4465	24.140923	12
AGTACGG	5365	23.994251	13
GCGTAGA	1770	23.291197	70
GAGTACG	5550	23.256294	12
TAATCGT	225	23.039482	38
AGTACTT	4630	22.909899	13