EGAF00005758347 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005758347
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1300569
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6656	0.5117759995817216	No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGCGCGACCCCGAGAGCCT	3478	0.2674214132429729	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3136	0.24112523057215726	No Hit
GGGTACGTGCCAAGCATCCTCGCGCGACCCCGAGAGCCTGGGGAGCGGGGGCTTGCTGGCCGTGGCACTCATTTA	1708	0.13132713450804992	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1460	0.11225855760055792	No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC	1432	0.11010565375616364	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT	1406	0.10810652875779755	No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA	1386	0.10656874029751594	No Hit
GGGAAGCGCTGGGTGCTTTATTTCCATGCTGGGTGCCCGGGAAGTATGTA	1310	0.1007251441484458	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	620	49.986862	1
GGTATCA	2825	46.655052	1
GTATCAA	7525	41.77355	1
TCGTATG	150	39.246796	40
TGGTATC	815	38.026817	2
TATCAAC	8910	35.509468	2
TATACAC	500	35.419262	3
ATCAACG	9205	34.445465	3
TCAACGC	9335	33.89672	4
CAACGCA	9475	33.53966	5
ACTCGAC	495	33.097492	27
CGTATGC	200	32.95345	41
CTTATAC	480	32.637943	1
AACGCAG	9915	32.18992	6
AGACTCG	490	32.002625	25
TTATACA	510	31.385847	2
ACGTCAT	450	30.44966	32
GACGTCA	510	29.534664	31
ACGCAGA	10775	29.49198	7
CGCAGAG	10770	29.442423	8