FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005758409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005758409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3103079
Sequences flagged as poor quality0
Sequence length20-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAAAACGGGACCATTCAGGCTGTCATCCCATG45310.14601626320180697No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAAAACGGGACCATTCAGG39710.12796967141345741No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC36810.11862411495163352No Hit
GATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGTCCCGTTTTCGG35420.11414469306131104No Hit
GTAATAATCAGCTTCATCGTCAGACTGGAGCCCACTGATGGCCAGGGAGG34660.11169551274717787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)