FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005758744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005758744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94322768
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCAAAGT1611100.09.5961122
CCCAAAG2154350.09.4024621
CCCAAAT954450.09.3996821
CCCAAAA1137950.09.0617781
CCCAAGT1123750.08.2208221
CCAGAAA1829300.08.1975511
AAAGTGC1368400.08.0765834
CCCTAAA601800.08.0466311
AGATCGG5455500.08.032958140-144
CCAGAAT1227450.07.92550471
CCCTAAT354700.07.84193231
GGCTAAT451800.07.7515231
TAGATCG931250.07.7388163140-144
GATCGGA5036000.07.675923140-144
CCATAAA616300.07.49484831
CAAAGTG1721400.07.4869463
CCACAAA1250950.07.36186551
CCCGAAT233450.07.3464931
CCCAATT494250.07.28987931
CAGATCG2018800.07.258773140-144
Produced by FastQC (version 0.11.5)