FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005758846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005758846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108226493
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA126100.07.185921794
GCCGTAT140400.06.086176494
TCGCCGT174200.06.06421594
TGGTCGC260150.05.739096694
CGTGTAG1365300.05.316448794
GTCGCCG207900.05.28447294
ATCTCGG509700.05.268920494
AGCGTCG1739600.05.214323594
GTCGTGT1515350.05.15871594
CGTATCA138900.05.137851794
CGTCGTG1559000.05.1136694
GATCTCG511900.05.081183494
TCGTGTA1406950.05.0189194
Produced by FastQC (version 0.11.5)