EGAF00005758947 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005758947
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1795298
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	3698	0.2059825165515697	No Hit
GTATGATAACTGGCCACTTCTCAGTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCAT	3037	0.1691641164865109	No Hit
GTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA	2910	0.16209008198081878	No Hit
GTAATAGACGGCCGTGTCCTCGGCTCTCAGGCTGTTCATTTGCAGATACA	2901	0.16158877244891934	No Hit
GTTATCATACTGCTGACAGTAATAAACTGCAACATCTTCAGACTGCAGGCTGCTGATGGTGAGAGTGAACT	2503	0.13941975092714412	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	2448	0.13635619267664756	No Hit
CTCCTGTACAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAAGGG	2431	0.1354092746719486	No Hit
GTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATG	2418	0.13468516090364943	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	2171	0.1209269993059648	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	2047	0.11402006797757254	No Hit
GAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATGTTGCAGTTTATTACTGTCAGCAGTATGATAACTGG	1978	0.11017669489967682	No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC	1945	0.10833855994937887	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	1893	0.10544210487618212	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	1811	0.10087461802998723	No Hit
GTCTATTACTGTGCGAGAGTATTAAGCAGTGAATGGTACGACAAATACTT	1801	0.10031760743898785	No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC	1798	0.10015050426168803	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1875	40.140755	1
GTATCAA	4195	37.27538	1
TATCAAC	4680	33.187515	2
ATCAACG	5055	30.726389	3
TCAACGC	5065	30.665726	4
CTCGTAT	175	29.66494	39
AACGCAG	5205	29.642841	6
CAACGCA	5245	29.613327	5
TCGTATG	195	28.41794	40
CGCAGAG	5490	27.974926	8
AGAGTAC	5470	27.950027	11
ACGCAGA	5695	27.02901	7
CAGAGTA	5745	26.612125	10
TGGTATC	900	26.344425	2
GTGGTAT	875	25.9226	1
GCAGAGT	5925	25.92035	9
TATACAC	375	23.82519	3
CGTATGC	240	23.104494	41
AGTACGG	4530	23.05798	13
GCGTTGT	985	22.873453	62