EGAF00005759004 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005759004
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	719710
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCAC	1403	0.19493962846146365	No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT	1207	0.16770643731502968	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1066	0.14811521307193173	No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA	1050	0.1458920954273249	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT	983	0.1365827902905337	No Hit
GTATCAACGCAGAGTACGGGGGAAGGCGCTTTGTGAAGTAGGCCTTATTT	850	0.1181031248697392	No Hit
CCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCG	849	0.11796418001695126	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGTATC	360	0.0	42.925045	2
GTATCAA	3040	0.0	42.603924	1
GGTATCA	1090	0.0	42.548977	1
GTGGTAT	385	0.0	41.939087	1
TATAAGA	135	0.0	40.699303	2
ATAAGAG	140	0.0	39.245754	3
GTAGTTT	415	0.0	38.170155	70
TATAGAG	50	1.9122411E-4	34.340034	5
TATCAAC	3860	0.0	33.4504	2
AACGCAG	3955	0.0	32.64918	6
CAACGCA	4040	0.0	32.215034	5
ATCAACG	4040	0.0	31.875034	3
TCAACGC	4140	0.0	31.353949	4
AGAGTAC	4030	0.0	31.274612	11
CAGAGTA	4070	0.0	30.967245	10
TTGTATC	45	0.0047165803	30.53933	17
ACGCAGA	4255	0.0	30.42795	7
GCAGAGT	4240	0.0	30.373606	9
CGCAGAG	4260	0.0	30.231007	8
ACAGTGT	60	5.5673585E-4	28.618685	8