EGAF00005759037 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005759037
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1117166
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	2187	0.19576320797446398	No Hit
GTGTTAGCACCTACGTAGCCTGGTACCAACAGACACCTGGCCAGGCTCCC	1677	0.150111979777401	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	1401	0.12540660922369637	No Hit
GTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATC	1388	0.12424295046573204	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCTCAGGATCTCGTATGCCGT	1311	0.11735051013009705	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1307	0.11699246128149263	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	1200	0.10741465458132453	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1186	0.10616148361120908	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	1142	0.1022229462765605	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGTCG	20	0.0066479524	53.096905	58
TCGTATG	280	0.0	42.05112	40
GTATCAA	3235	0.0	41.418285	1
GGTATCA	1220	0.0	40.064205	1
CGTATGC	310	0.0	38.042065	41
AGTACCG	55	7.883729E-6	37.286312	5
TATCAAC	3640	0.0	36.994427	2
CACGAGA	450	0.0	36.465893	21
ACGAGAC	445	0.0	36.108997	22
ATCAACG	3750	0.0	36.09315	3
TCAACGC	3760	0.0	36.08806	4
CAACGCA	3855	0.0	35.376057	5
TATCCCG	40	0.0027180263	34.179123	5
TATGCCG	350	0.0	33.783432	43
AACGCAG	4060	0.0	33.758198	6
CGAGCCC	475	0.0	33.090893	15
GCCGTCT	360	0.0	32.962135	46
CCCACGA	490	0.0	32.78259	19
GCCCACG	490	0.0	32.08365	18
CGCAGAG	4375	0.0	31.160196	8