EGAF00005759038 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005759038
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1117166
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3914	0.3503507983594202	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	2157	0.19307784160993083	No Hit
GTGTTAGCACCTACGTAGCCTGGTACCAACAGACACCTGGCCAGGCTCCC	1606	0.14375661271467266	No Hit
GTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATC	1345	0.12039392534323459	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1320	0.11815612003945698	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	1261	0.11287489952254186	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	1219	0.10911538661219551	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1157	0.10356562945882707	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	3470	0.0	42.27377	1
GGTATCA	1220	0.0	41.10451	1
TATCAAC	3835	0.0	38.15624	2
ATCAACG	3890	0.0	37.702755	3
TCAACGC	3900	0.0	37.69354	4
GCGAATT	65	0.001786477	37.228474	70
CAACGCA	3990	0.0	36.67398	5
AACGCAG	4085	0.0	35.989708	6
ACGCAGA	4365	0.0	33.759235	7
CGCAGAG	4385	0.0	33.683052	8
AGAGTAC	4480	0.0	32.81651	11
TGGTATC	435	0.0	31.364937	2
GCAGAGT	4740	0.0	31.016445	9
CAGAGTA	4775	0.0	30.860538	10
GAGTACG	2735	0.0	30.182217	12
AGTACGG	2745	0.0	30.072264	13
GTGGTAT	485	0.0	28.838596	1
TTCGCGG	50	0.0074485186	27.814096	42
GCATGCG	90	0.008784946	26.887232	70
ATAGCGG	80	7.484778E-5	26.82343	63