EGAF00005759097 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005759097
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	977372
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1411	0.14436673037492379	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1347	0.13781855833807394	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	1315	0.13454447231964903	No Hit
GTGCAGTGACAGTCGGGGGTGGCAGCATGAGGGAGATGGGGTAGGTGGAG	1299	0.13290742931043656	No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC	1289	0.13188427742967876	No Hit
GTCACTGCACCGACCGGCCCTCGAGGACCTGCTCTTAGGTTCAGAAGCGAACCTCACGTGCACACTGACCGGC	1107	0.11326291319988704	No Hit
GTGTGACCTGGAGCGAAAGCGGACAGGGCGTGACCGCCAGAAACTTCCCACCCAGCCAGGATGCCTCCGGGGAC	1035	0.10589621965843096	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	2335	0.0	40.972744	1
CGATTGT	95	5.138314E-6	39.680103	70
GTGGTAT	325	0.0	36.928566	1
CTTATAC	275	0.0	36.16122	1
GGTATCA	1290	0.0	33.227528	1
TTATACA	280	0.0	33.06106	2
TATACAC	280	0.0	33.06106	3
TATCAAC	2910	0.0	32.98953	2
TCGTATG	95	8.576535E-9	32.76773	40
ACGGGTA	95	9.344149E-9	32.48104	16
ATCAACG	2995	0.0	32.28222	3
CAACGCA	2985	0.0	32.045784	5
TCAACGC	3040	0.0	31.691572	4
AACGCAG	3065	0.0	31.321215	6
TATCTCG	155	0.0	31.128448	36
TCAATCG	80	2.448971E-6	30.65547	52
CACGAGA	280	0.0	30.616795	21
ACCGATC	270	0.0	30.504133	27
AGAGTAC	3150	0.0	29.493437	11
CGCAGAG	3285	0.0	29.11774	8